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44 bytes added
, 02:06, 2 November 2010
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− | [[Category:Software|Bam]] | + | [[Category:Software]] |
− | [[Category:libbam]] | + | [[Category:C++]] |
| + | [[Category:libStatGen]] |
| + | [[Category:libStatGen BAM]] |
| + | |
| = bam Executable = | | = bam Executable = |
− | When the pipeline is compiled, the SAM/BAM executable, "bam" is generated in the pipeline/bam/ directory. | + | When statgen is compiled, the SAM/BAM executable, "bam" is generated in the statgen/src/bin/ directory. |
| | | |
| The software reads the beginning of an input file to determine if it is SAM/BAM. To determine the format (SAM/BAM) of the output file, the software checks the output file's extension. If the extension is ".bam" it writes a BAM file, otherwise it writes a SAM file. | | The software reads the beginning of an input file to determine if it is SAM/BAM. To determine the format (SAM/BAM) of the output file, the software checks the output file's extension. If the extension is ".bam" it writes a BAM file, otherwise it writes a SAM file. |