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| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
| | | |
− | [[Media:BamUtilLibStatGen.1.0.1.tgz|BamUtilLibStatGen.1.0.1.tgz]] - Released 05/04/2012
| |
| | | |
− | '''BamUtilLibStatGen.1.0.1 Release Notes''' | + | [[Media:BamUtilLibStatGen.1.0.2.tgz|BamUtilLibStatGen.1.0.2.tgz]] - Released 05/16/2012 |
− | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.1]] | + | |
− | * Adds: [[BamUtil: splitBam|splitBam]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: trimBam|trimBam]], [[BamUtil: polishBam|polishBam]], [[BamUtil: rgMergeBam|rgMergeBam]], [[BamUtil: gapInfo|gapInfo]] | + | '''BamUtilLibStatGen.1.0.2 Release Notes''' |
− | * Adds additional functionality to [[BamUtil: stats|stats]]
| + | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.2]] |
− | * Adds leftShifting to [[BamUtil: writeRegion|writeRegion]] and [[BamUtil: convert|convert]]
| + | * Adds: [[BamUtil: bam2FastQ|bam2FastQ]] |
− | * Adds more diff fields to [[BamUtil: diff|diff]]
| + | |
| | | |
| '''Older Releases''' | | '''Older Releases''' |
| + | *[[Media:BamUtilLibStatGen.1.0.1.tgz|BamUtilLibStatGen.1.0.1.tgz]] - Released 05/04/2012 |
| + | ** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.1]] |
| + | ** Adds: [[BamUtil: splitBam|splitBam]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: trimBam|trimBam]], [[BamUtil: polishBam|polishBam]], [[BamUtil: rgMergeBam|rgMergeBam]], [[BamUtil: gapInfo|gapInfo]] |
| + | ** Adds additional functionality to [[BamUtil: stats|stats]] |
| + | ** Adds leftShifting to [[BamUtil: writeRegion|writeRegion]] and [[BamUtil: convert|convert]] |
| + | ** Adds more diff fields to [[BamUtil: diff|diff]] |
| + | |
| * [[Media:BamUtilLibStatGen.1.0.0.tgz|BamUtilLibStatGen.1.0.0.tgz]] - Released 10/10/2011 | | * [[Media:BamUtilLibStatGen.1.0.0.tgz|BamUtilLibStatGen.1.0.0.tgz]] - Released 10/10/2011 |
| **Initial release of bamUtil that includes libStatGen version 1.0.0. It started from the tool found in the deprecated StatGen repository. | | **Initial release of bamUtil that includes libStatGen version 1.0.0. It started from the tool found in the deprecated StatGen repository. |
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| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
| | | |
− | [[Media:BamUtil.1.0.1.tgz|BamUtil.1.0.1.tgz]] - Released 05/04/2012 | + | [[Media:BamUtil.1.0.2.tgz|BamUtil.1.0.2.tgz]] - Released 05/16/2012 |
| | | |
− | '''BamUtil.1.0.1 Release Notes''' | + | '''BamUtil.1.0.2 Release Notes''' |
− | * Adds: [[BamUtil: splitBam|splitBam]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: trimBam|trimBam]], [[BamUtil: polishBam|polishBam]], [[BamUtil: rgMergeBam|rgMergeBam]], [[BamUtil: gapInfo|gapInfo]] | + | * Adds: [[BamUtil: bam2FastQ|bam2FastQ]] |
− | * Adds additional functionality to [[BamUtil: stats|stats]]
| |
− | * Adds leftShifting to [[BamUtil: writeRegion|writeRegion]] and [[BamUtil: convert|convert]]
| |
− | * Adds more diff fields to [[BamUtil: diff|diff]]
| |
| | | |
| '''Older Releases''' | | '''Older Releases''' |
| + | *[[Media:BamUtil.1.0.1.tgz|BamUtil.1.0.1.tgz]] - Released 05/04/2012 |
| + | ** Adds: [[BamUtil: splitBam|splitBam]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: trimBam|trimBam]], [[BamUtil: polishBam|polishBam]], [[BamUtil: rgMergeBam|rgMergeBam]], [[BamUtil: gapInfo|gapInfo]] |
| + | ** Adds additional functionality to [[BamUtil: stats|stats]] |
| + | ** Adds leftShifting to [[BamUtil: writeRegion|writeRegion]] and [[BamUtil: convert|convert]] |
| + | ** Adds more diff fields to [[BamUtil: diff|diff]] |
| *[[Media:BamUtil.1.0.0.tgz|BamUtil.1.0.0.tgz]] - Released 10/10/2011 | | *[[Media:BamUtil.1.0.0.tgz|BamUtil.1.0.0.tgz]] - Released 10/10/2011 |
| **Initial release of just bamUtil. It started from the tool found in the deprecated StatGen repository. | | **Initial release of just bamUtil. It started from the tool found in the deprecated StatGen repository. |