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* [[C++ Executable: bam#Print SAM/BAM header|Print SAM/BAM header]]
* [[C++ Executable: bam#Print SAM/BAM header|Print SAM/BAM header]]
* [[C++ Executable: bam#Split BAM by Chromosome|Split BAM by Chromosome]]
* [[C++ Executable: bam#Split BAM by Chromosome|Split BAM by Chromosome]]
* [[C++ Executable: bam#Write the alignments in the indexed BAM file that fall into the specified region|Write the alignments in the indexed BAM file that fall into the specified region]]
* [[C++ Executable: bam#Dump a BAM index file|Dump a BAM index file into an easy to read text version]]
* [[C++ Executable: bam#Dump a BAM index file|Dump a BAM index file into an easy to read text version]]
* [[C++ Executable: bam#Read & Write indexed BAM file|Read an indexed BAM file reference by reference id -1 to 22 and write it out as a SAM/BAM file]]
* [[C++ Executable: bam#Read & Write indexed BAM file|Read an indexed BAM file reference by reference id -1 to 22 and write it out as a SAM/BAM file]]
