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− | [[Media:BamUtilLibStatGen.1.0.11.tar.gz|BamUtilLibStatGen.1.0.11.tar.gz]] - Released 2/28/2014 | + | [[Media:BamUtilLibStatGen.1.0.12.tar.gz|BamUtilLibStatGen.1.0.12.tgz]] - Released 5/14/2014 |
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− | '''BamUtilLibStatGen.1.0.11 Release Notes''' | + | '''BamUtilLibStatGen.1.0.12 Release Notes''' |
− | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] - see link for version updates | + | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]] - see link for version updates |
− | * Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.11]] - see link for version updates | + | * Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.12]] - see link for version updates |
− | * Now properly supports 'B' & 'f' tags | + | * Adds regions to mergeBam |
− | * Cleanup - compile issues
| + | * Accept ',' delimiters for the tags string input in squeeze, revert, & diff |
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| '''Older Releases''' | | '''Older Releases''' |
| + | *[[Media:BamUtilLibStatGen.1.0.11.tar.gz|BamUtilLibStatGen.1.0.11.tar.gz]] - Released 2/28/2014 |
| + | ** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] - see link for version updates |
| + | ** Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.11]] - see link for version updates |
| + | ** Now properly supports 'B' & 'f' tags |
| + | ** Cleanup - compile issues |
| + | |
| *[[Media:BamUtilLibStatGen.1.0.10.tar.gz|BamUtilLibStatGen.1.0.10.tar.gz]] - Released 1/2/2014 | | *[[Media:BamUtilLibStatGen.1.0.10.tar.gz|BamUtilLibStatGen.1.0.10.tar.gz]] - Released 1/2/2014 |
| ** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]] - see link for version updates | | ** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]] - see link for version updates |
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| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
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− | * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 | + | * [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014 |
| + | |
| + | '''BamUtil.1.0.12 Release Notes''' |
| + | * [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014 |
| + | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]] |
| + | ** Update [[BamUtil: mergeBam|mergeBam]] |
| + | *** Add a regions option |
| + | ** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]] |
| + | *** Also accept ',' instead of just ';' as the delimiter in the input tags string. |
| + | |
| + | '''Older Releases''' |
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− | '''BamUtil.1.0.11 Release Notes'''
| |
| * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 | | * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 |
| ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] | | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] |
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| *** Update compatibility with libStatGen due to 'B' & 'f' tag handling updates | | *** Update compatibility with libStatGen due to 'B' & 'f' tag handling updates |
| ** Add tests for 'B' & 'f' tags | | ** Add tests for 'B' & 'f' tags |
− |
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− |
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− | '''Older Releases'''
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| * [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz]] - Released 1/2/2014 | | * [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz]] - Released 1/2/2014 |