BamUtil

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bam Executable

The bam executable has the following functions.

  • Read and Validate a SAM/BAM file
  • Read a SAM/BAM file and write the same SAM/BAM file.
  • Dump a BAM index file into an easy to read text version.
  • Read an indexed BAM file reference by reference id -1 to 22 and write it out as a SAM/BAM file.


Read and Validate a SAM/BAM file

Usage