Difference between revisions of "BamUtil: bam2FastQ"
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The following parameters are in effect: | The following parameters are in effect: | ||
Input BAM/SAM File : (-iname) | Input BAM/SAM File : (-iname) | ||
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Output FastQ Files | Output FastQ Files | ||
Output : --first [], --second [], --single [] | Output : --first [], --second [], --single [] | ||
| + | |||
FATAL ERROR - | FATAL ERROR - | ||
Input BAM/SAM file not provided! | Input BAM/SAM file not provided! | ||
Revision as of 15:17, 18 March 2010
Purpose
This converts a BAM file into FastQ files. This is necessary when only BAM files are delivered but a new alignment is desired. By converting BAM to FastQ files new alignments can be done using FastQ files
How to use it
When bam2FastQ is invoked without any arguments the following information is displayed
The following parameters are in effect:
Input BAM/SAM File : (-iname)
Output FastQ Files
Output : --first [], --second [], --single []
FATAL ERROR - Input BAM/SAM file not provided!
