3,045
edits
Changes
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| Clip occurs at the last match/mismatch position of the read (the entire read is clipped)
| Clip occurs at the last match/mismatch position of the read (the entire read is clipped)
| Entire read is soft clipped, 0-based position is left as the original (not modified)
| Entire read is soft clipped, 0-based position is left as the original (not modified)
|-
| Clip occurs after the read ends
| Entire read is soft clipped, 0-based position is left as the original (not modified)
|-
| Clip occurs before the read starts
| Nothing is clipped. The read is not changed.
|}
|}
| Leave the insertion, even if it results in a 70M3I27S
| Leave the insertion, even if it results in a 70M3I27S
|-
|-
|Clip occurs at the first position of the read (the entire read is clipped)
|Clip occurs at the first position of the read (the entire read is clipped), preceding insertions remain.
| Entire read is soft clipped, 0-based position is left as the original (not modified)
|-
| Clip occurs before the read starts
| Entire read is soft clipped, 0-based position is left as the original (not modified)
| Entire read is soft clipped, 0-based position is left as the original (not modified)
|-
| Clip occurs after the read ends
| Nothing is clipped. The read is not changed.
|}
|}
