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→Parameters: add recover option
--noeof : do not expect an EOF block on a bam file.
--noeof : do not expect an EOF block on a bam file.
--params : print the parameter settings
--params : print the parameter settings
--recover : attempt to recover the input bam file.
Optional Sequence Parameters (only specify one):
Optional Sequence Parameters (only specify one):
--seqOrig : Leave the sequence as is (default & used if reference is not specified).
--seqOrig : Leave the sequence as is (default & used if reference is not specified).
Sequence with Bases: AATAACTAGATAGGG
Sequence with Bases: AATAACTAGATAGGG
Sequence with Equals: AA======G===GGG
Sequence with Equals: AA======G===GGG
= Usage =
= Usage =
