Difference between revisions of "BamUtil: dumpRefInfo"
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Revision as of 13:06, 2 September 2011
Overview of the
dumpRefInfo function of
dumpRefInfo option on the bamUtil executable prints the SAM/BAM file's reference information.
Required Parameters: --in : the SAM/BAM file to be read Optional Parameters: --noeof : do not expect an EOF block on a bam file. --printRecordRefs : print the reference information for the records in the file (grouped by reference). --params : print the parameter settings
./bam dumpRefInfo --in <inputFilename> [--noeof] [--printRecordRefs] [--params]
- 0: the file was processed successfully.
- non-0: the file was not processed successfully.