Difference between revisions of "BamUtil: dumpRefInfo"
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Revision as of 14:06, 2 September 2011
Overview of the dumpRefInfo function of bamUtil
The dumpRefInfo option on the bamUtil executable prints the SAM/BAM file's reference information.
Parameters
Required Parameters:
--in : the SAM/BAM file to be read
Optional Parameters:
--noeof : do not expect an EOF block on a bam file.
--printRecordRefs : print the reference information for the records in the file (grouped by reference).
--params : print the parameter settings
Usage
./bam dumpRefInfo --in <inputFilename> [--noeof] [--printRecordRefs] [--params]
Return Value
- 0: the file was processed successfully.
- non-0: the file was not processed successfully.
