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, 14:06, 15 June 2012
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| === Covariates Notes === | | === Covariates Notes === |
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− | <span style="color:red">Coming Soon</span>
| + | Recalibration is done by grouping bases based on a set of covariates: |
| + | * Read Group |
| + | * Cycle |
| + | * 1st/2nd read in pair |
| + | * Previous Cycle's Base |
| + | * This Cycle's Base |
| + | |
| + | For Reverse Strands, the reverse complement of the SAM/BAM is used for the cycle, previous cycle's base, and current cycle's base. |
| + | |
| + | |
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| == How to use it == | | == How to use it == |