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, 19:44, 19 January 2012
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| This output does not include a MapQual255 count. | | This output does not include a MapQual255 count. |
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| ===== Sample Output ===== | | ===== Sample Output ===== |
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| 1 10024 10025 14 12 85.714 39 30 76.923 51.282 25.641 51.282 84.615 38.462 15.385 15.385 11.000 21 | | 1 10024 10025 14 12 85.714 39 30 76.923 51.282 25.641 51.282 84.615 38.462 15.385 15.385 11.000 21 |
| </pre> | | </pre> |
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| ==== Count-Based Output Format (<code>--pBaseQC</code>) ==== | | ==== Count-Based Output Format (<code>--pBaseQC</code>) ==== |
| Order/Descriptions: | | Order/Descriptions: |
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| |- | | |- |
| |} | | |} |
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| ==== Summary of per Position Statistics (<code>--baseSum</code>) ==== | | ==== Summary of per Position Statistics (<code>--baseSum</code>) ==== |
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| |} | | |} |
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| ===== Sample Output ===== | | ===== Sample Output ===== |
| <pre> | | <pre> |
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| TotalReads Dups QCFail Mapped Paired ProperPaired ZeroMapQual MapQual<10 MapQual255 PassMapQual AverageMapQuality AverageMapQualCount | | TotalReads Dups QCFail Mapped Paired ProperPaired ZeroMapQual MapQual<10 MapQual255 PassMapQual AverageMapQuality AverageMapQualCount |
| Depth Q20Bases | | Depth Q20Bases |
− | 14.307692 1.846154 1.846154 8.769231 7.846154 0.923077 2.923077 5.846154 0.000000 2.923077 11.000000 | + | 14.307692 1.846154 1.846154 8.769231 7.846154 0.923077 2.923077 5.846154 0.000000 2.923077 11.000000 8.769231 2.076923 1.153846 |
− | 8.769231 2.076923 1.153846 | + | 17.670053 2.882307 2.882307 9.038380 7.603137 1.441153 3.012793 6.025586 0.000000 3.012793 0.000000 9.038380 2.841993 1.993579 |
− | 17.670053 2.882307 2.882307 9.038380 7.603137 1.441153 3.012793 6.025586 0.000000 3.012793 0.000000 | |
− | 9.038380 2.841993 1.993579 | |
| </pre> | | </pre> |
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| [[Category:BamUtil|stats]] [[Category:BAM_Software]] [[Category:Software]] | | [[Category:BamUtil|stats]] [[Category:BAM_Software]] [[Category:Software]] |