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13 bytes added ,  23:28, 12 November 2017
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== Soft Clipping Notes (--clip/-c) ==
 
== Soft Clipping Notes (--clip/-c) ==
(Version 1.0.14 and later)
+
Available in version 1.0.14 and later.
 +
 
 
When soft clipping:
 
When soft clipping:
 
:* if the entire read would be soft clipped, no clipping is done, and instead the read is marked as unmapped
 
:* if the entire read would be soft clipped, no clipping is done, and instead the read is marked as unmapped

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