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Left shift indels as far as they can go in the read.
Left shift indels as far as they can go in the read.
=== Skip an Records with any of the Specified Flags (<code>--excludeFlags</code>) ===
=== Skip Records with any of the Specified Flags (<code>--excludeFlags</code>) ===
Use <code>--excludeFlags</code> followed by the flags (as one integer) to skip any records that has any of the specified flags set.
Use <code>--excludeFlags</code> followed by the flags (as one integer) to skip any records that has any of the specified flags set.
This parameter was added in version 1.0.10.
=== Only Process Records with the all of the Specified Flags (<code>--requiredFlags</code>) ===
=== Only Process Records with the all of the Specified Flags (<code>--requiredFlags</code>) ===
Use <code>--requiredFlags</code> followed by the flags (as one integer) to only process records with all of the specified flags set.
Use <code>--requiredFlags</code> followed by the flags (as one integer) to only process records with all of the specified flags set.
This parameter was added in version 1.0.10.
{{paramsParameter}}
{{paramsParameter}}
