Biostatistics 666: Introduction to De Novo Assembly
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Overview
Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery.
Slides
Recommended Reading
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. Nature Genetics 44:226-232