Biostatistics 830 - Code Snippets
Li et al (2010) Genet Epidemiol
Full Citation
Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol. 34:816-34
Code Snippets
830 - Haplotyper::RandomSetup()
830 - Haplotyper::SetupPrior()
830 - Haplotyper::ConditionOnData()
830 - Haplotyper::ScoreLeftConditional()
830 - Haplotyper::ScoreLeftConditional() (smart, complicated)
830 - Haplotyper::SampleChromosomes()
830 - Haplotyper::SampleHaplotypes()
830 - Haplotyper::SummarizeOptions()
830 - Haplotyper::SampleOneHaplotype()
830 - Haplotyper::ImputeGenotypes()
830 - Haplotyper::ImputeGenotypes() (edge)
830 - Haplotyper::ImputeGenotypes() (internal)
Howie et al (2012) Nat Genet
Full Citation
Howie B, Fuchsberger C, Stephens M, Marchini J, Abecasis GR (2012) Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat Genet. 44:955-9. PMID: 22820512
Code Snippets
830 - MarkovModel::Transpose()
830 - MarkovModel::Condition()
830 - MarkovModel::WalkRight()
830 - MarkovModel::CountRecombinants()
