Difference between revisions of "C++ Library: libStatGen"

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(Created page with 'To use the StatGenLibrary, first download:')
 
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== DESCRIPTION ==
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open source, freely available (GPL license), easy to use APIs
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*File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
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*Common file formats – SAM/BAM, FASTQ, GLF
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**Indexed access to BAM files
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**Accessors to get/set values
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*Utility classes, including:
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**Cigar – interpretation and mapping between query and reference
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**Pileup – structured access to data by individual reference position
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=== Contents ===
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* [[StatGenLibrary: general]] - General classes for file processing and performing common tasks (used by most other libraries).
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* [[StatGenLibrary: BAM]] - Classes specific for reading/writing/analyzing SAM/BAM files.
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* [[StatGenLibrary: GLF]] - Classes specific for reading/writing/analyzing GLF files.
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* [[StatGenLibrary: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files.
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== Download ==
 
To use the StatGenLibrary, first download:
 
To use the StatGenLibrary, first download:

Revision as of 12:33, 29 October 2010

DESCRIPTION

open source, freely available (GPL license), easy to use APIs

  • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
  • Common file formats – SAM/BAM, FASTQ, GLF
    • Indexed access to BAM files
    • Accessors to get/set values
  • Utility classes, including:
    • Cigar – interpretation and mapping between query and reference
    • Pileup – structured access to data by individual reference position

Contents


Download

To use the StatGenLibrary, first download: