Difference between revisions of "C++ Library: libStatGen"
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| + | == DESCRIPTION == | ||
| + | open source, freely available (GPL license), easy to use APIs | ||
| + | *File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout | ||
| + | *Common file formats – SAM/BAM, FASTQ, GLF | ||
| + | **Indexed access to BAM files | ||
| + | **Accessors to get/set values | ||
| + | *Utility classes, including: | ||
| + | **Cigar – interpretation and mapping between query and reference | ||
| + | **Pileup – structured access to data by individual reference position | ||
| + | |||
| + | === Contents === | ||
| + | * [[StatGenLibrary: general]] - General classes for file processing and performing common tasks (used by most other libraries). | ||
| + | * [[StatGenLibrary: BAM]] - Classes specific for reading/writing/analyzing SAM/BAM files. | ||
| + | * [[StatGenLibrary: GLF]] - Classes specific for reading/writing/analyzing GLF files. | ||
| + | * [[StatGenLibrary: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files. | ||
| + | |||
| + | |||
| + | == Download == | ||
To use the StatGenLibrary, first download: | To use the StatGenLibrary, first download: | ||
Revision as of 13:33, 29 October 2010
DESCRIPTION
open source, freely available (GPL license), easy to use APIs
- File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
- Common file formats – SAM/BAM, FASTQ, GLF
- Indexed access to BAM files
- Accessors to get/set values
- Utility classes, including:
- Cigar – interpretation and mapping between query and reference
- Pileup – structured access to data by individual reference position
Contents
- StatGenLibrary: general - General classes for file processing and performing common tasks (used by most other libraries).
- StatGenLibrary: BAM - Classes specific for reading/writing/analyzing SAM/BAM files.
- StatGenLibrary: GLF - Classes specific for reading/writing/analyzing GLF files.
- StatGenLibrary: FASTQ - Classes specific for reading/writing/analyzing FastQ files.
Download
To use the StatGenLibrary, first download:
