C++ Library: libStatGen

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Revision as of 12:33, 29 October 2010 by Mktrost (talk | contribs)
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DESCRIPTION

open source, freely available (GPL license), easy to use APIs

  • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
  • Common file formats – SAM/BAM, FASTQ, GLF
    • Indexed access to BAM files
    • Accessors to get/set values
  • Utility classes, including:
    • Cigar – interpretation and mapping between query and reference
    • Pileup – structured access to data by individual reference position

Contents


Download

To use the StatGenLibrary, first download: