Changes

CalcMatch is a C/C++ software developed by Yun Li that compares two sets of pedigree files. It was initially written to compare imputed genotypes with their true/experimental counterpart but can be used to compare the concordance between any two sets of pedigree files. The input data are in standard Merlin/QTDT format (http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html).  

CalcMatch is a C/C++ software developed by Yun Li that compares two sets of pedigree files. It was initially written to compare imputed genotypes with their true/experimental counterpart but can be used to compare the concordance between any two sets of pedigree files. The input data are in standard Merlin/QTDT format (http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html).  

== --impped --impdat specify one input pedigree set. <br> ==

== --impped --impdat specify one input pedigree set. <br> ==

--trueped --truedat specify the other input pedigree set.  

== --trueped --truedat specify the other input pedigree set. ==

--match generates a matrix taking values 0,1,2 indicating # of matched alleles. The dimension of the matrix is # of overlapping individuals times # of overlapping markers of the two input pedigree sets.  

== --match ==

generates a matrix taking values 0,1,2 indicating # of matched alleles. The dimension of the matrix is # of overlapping individuals times # of overlapping markers of the two input pedigree sets.  

--bySNP is turned on by default to generate SNP specific measures. The output .bySNP will contain the following 6 fields for each SNP:  

--bySNP is turned on by default to generate SNP specific measures. The output .bySNP will contain the following 6 fields for each SNP: