Difference between revisions of "DosageConvertor"
From Genome Analysis Wiki
Jump to navigationJump to searchSanty.8128 (talk | contribs) |
Santy.8128 (talk | contribs) |
||
Line 1: | Line 1: | ||
− | * '''Download | + | * '''Download Release Version 1.0.3 !!! (Updated June 2016) !!!''' |
= Introduction = | = Introduction = |
Revision as of 03:06, 7 June 2016
- Download Release Version 1.0.3 !!! (Updated June 2016) !!!
Introduction
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther formats such as MaCH or PLINK.
Download
VERSION: 1.0.3 !!! (Updated 6.6.2016) !!!
Github Repo: Users can clone from github repository as well : Github
Cloning from GitHub is recommened so that updates can be easily pulled back !!!
Description | Download Link |
---|---|
DosageConvertor Source Files |
Usage
Users should follow the following steps to compile DosageConvertor (if they downloaded the source files).
## EXTRACT M3VCFTOOLS AND COMPILE wget ftp://share.sph.umich.edu/minimac3/DosageConvertor/DosageConvertor.v1.0.3.tar.gz tar -xzvf DosageConvertor.v1.0.3.tar.gz cd DosageConvertor/ make
Usage: ./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz --info TestDataImputedVCF.info --prefix OutputFilePrefix --type plink OR mach // depending on output format --format DS or GP // based on if you want to output // dosage (DS) or genotype prob (GP) --buffer 10000 // Number of Markers to import and // print at a time (valid only for // MaCH format) --idDelimiter _ // Delimiter to Split VCF Sample ID into // FID and IID for PLINK format
Contact
In case of any queries and bugs please contact Sayantan Das.