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The command options for DosageConvertor are explained below.
The command options for DosageConvertor are explained below.
*<code>--vcfDose</code> is a mandatory parameter requiring the input VCF dosage file from minimac3/4.
*<code>--vcfDose</code> is a mandatory parameter indicating the minimac3/4 VCF dosage file to be converted
*<code>--info</code> denotes the info file from the same imputation output. This parameter is optional, but if NO info file is provided, the output MaCH info file will have some missing columns.
*<code>--info</code> is the info file generated by minimac3/4 at the same time as the VCF dosage file. This parameter is optional, but if NO info file is provided, the output MaCH info file will have some missing columns.
*<code>--prefix</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>).
*<code>--prefix</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>).
*<code>--type</code> denotes the output file format (available handles: <code>plink</code> (default) and <code>mach</code>).
*<code>--type</code> denotes the output file format (available handles: <code>plink</code> (default) and <code>mach</code>).
