DosageConvertor
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Revision as of 19:05, 6 June 2016 by Santy.8128 (talk | contribs)
- Download Pilot Version 1.0.1 !!! (Updated June 2015) !!!
Introduction
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther formats such as MaCH or PLINK.
Download
VERSION: 1.0.1 !!! (Updated 10.25.2015) !!!
Github Repo: Users can clone from github repository as well : m3vcftools Github
Cloning from GitHub is recommened so that updates can be easily pulled back !!!
Description | Download Link |
---|---|
m3vcftools Source Files | UNIX Users |
Usage
Users should follow the following steps to compile m3vcftools (if they downloaded the source files).
## EXTRACT M3VCFTOOLS AND COMPILE tar -xzvf m3vcftools.v1.0.1.tar.gz cd m3vcftools / make
For e.g. to calculate LD the command should be: ../bin/m3vcftools --vcf INPUT.m3vcf.gz --hap-r2 --ld-window-bp 10000 --min-r2 0.4 --out PREFIX
For e.g. to convert a VCF file into M3VCF format : ../bin/m3vcftools --vcf INPUT.vcf.gz --recode --out PREFIX
Contact
In case of any queries and bugs please contact Sayantan Das.