DosageConvertor

• Download Pilot Version 1.0.1 !!! (Updated June 2015) !!!

Introduction

DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther formats such as MaCH or PLINK.

Download

VERSION: 1.0.1 !!! (Updated 10.25.2015) !!!

Github Repo: Users can clone from github repository as well : m3vcftools Github

Cloning from GitHub is recommened so that updates can be easily pulled back !!!

Description	Download Link
m3vcftools Source Files	UNIX Users

Usage

Users should follow the following steps to compile m3vcftools (if they downloaded the source files).

## EXTRACT M3VCFTOOLS AND COMPILE
 
tar -xzvf m3vcftools.v1.0.1.tar.gz
cd m3vcftools /
make

For e.g. to calculate LD the command should be: ../bin/m3vcftools --vcf INPUT.m3vcf.gz --hap-r2 --ld-window-bp 10000 --min-r2 0.4 --out PREFIX

For e.g. to convert a VCF file into M3VCF format : ../bin/m3vcftools --vcf INPUT.vcf.gz --recode --out PREFIX

Contact

In case of any queries and bugs please contact Sayantan Das.