255
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchEvaluating a Read Mapper on Simulated Data (view source)
Revision as of 15:50, 11 February 2010
, 15:50, 11 February 2010→Available Test Datasets
For illumina (from Sanger, 108mer hap1 test file):
For illumina (from Sanger, 108mer hap1 test file):
Example:
Example:
<pre>
_1 file:
_1 file:
@20:14812275:F:217;None;None/1
@20:14812275:F:217;None;None/1
+
+
%3===;==;7<<;7<5;==<<4<;9=8==<====:<<<<<;<==:=<58;===;:8'8:<===:.9:38908:=;;7;57)%.+%)967%%-%%'6:-%)7);<;0+%
%3===;==;7<<;7<5;==<<4<;9=8==<====:<<<<<;<==:=<58;===;:8'8:<===:.9:38908:=;;7;57)%.+%)967%%-%%'6:-%)7);<;0+%
</pre>
Conclusion:
Conclusion:
For SOLiD (from Sanger, 50 mer hap1 test file)
For SOLiD (from Sanger, 50 mer hap1 test file)
e.g.
e.g.
<pre>
_1 file:
_1 file:
>2:67043752:F:1445;2,67043761,A,G;None
>2:67043752:F:1445;2,67043761,A,G;None
>4:125830377:R:-1541;None;None
>4:125830377:R:-1541;None;None
G13311131230200010201210032223330120312000301230032
G13311131230200010201210032223330120312000301230032
</pre>
Conclusion:
Conclusion:
