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Evaluating a Read Mapper on Simulated Data (view source)

Revision as of 11:52, 16 February 2010

9 bytes added ,  11:52, 16 February 2010
→‎Bulk statistics result
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<pre>
 
<pre>
 
BWA(second) Karma(second) Scenarios
 
BWA(second) Karma(second) Scenarios
−
2594 7182 BS_SE_DEL200_1000000_50.fastq
+
7561 4638 BS_PE_DEL200_1000000_50_?.fastq
−
2641 -1 BS_SE_DEL30_1000000_50.fastq
+
7548 4677 BS_PE_DEL30_1000000_50_?.fastq
−
2355 -1 BS_SE_DEL5_1000000_50.fastq
+
7225 4730 BS_PE_DEL5_1000000_50_?.fastq
−
441 7941 BS_SE_EXACT_1000000_50.fastq
+
975 6531 BS_PE_EXACT_1000000_50_?.fastq
−
809 282 BS_SE_INDEL30_1000000_50.fastq
+
1726 793 BS_PE_INDEL30_1000000_50_?.fastq
−
2217 -1 BS_SE_INDEL5_1000000_50.fastq
+
6199 4140 BS_PE_INDEL5_1000000_50_?.fastq
−
645 7206 BS_SE_SNP1_1000000_50.fastq
+
1193 4949 BS_PE_SNP1_1000000_50_?.fastq
−
1102 -1 BS_SE_SNP2_1000000_50.fastq
+
1646 4513 BS_PE_SNP2_1000000_50_?.fastq
−
1142 -1 BS_SE_SNP3_1000000_50.fastq
+
2064 4089 BS_PE_SNP3_1000000_50_?.fastq
−
6536 8874 BS_PE_DEL200_1000000_50_?.fastq
+
2594 3707 BS_SE_DEL200_1000000_50.fastq
−
6699 9017 BS_PE_DEL30_1000000_50_?.fastq
+
2641 3942 BS_SE_DEL30_1000000_50.fastq
−
6468 9033 BS_PE_DEL5_1000000_50_?.fastq
+
2355 4263 BS_SE_DEL5_1000000_50.fastq
−
1743 10112 BS_PE_EXACT_1000000_50_?.fastq
+
441 4228 BS_SE_EXACT_1000000_50.fastq
−
2305 231 BS_PE_INDEL30_1000000_50_?.fastq
+
809 764 BS_SE_INDEL30_1000000_50.fastq
−
5703 2989 BS_PE_INDEL5_1000000_50_?.fastq
+
2217 3932 BS_SE_INDEL5_1000000_50.fastq
−
1974 3718 BS_PE_SNP1_1000000_50_?.fastq
+
645 3808 BS_SE_SNP1_1000000_50.fastq
−
2396 3339 BS_PE_SNP2_1000000_50_?.fastq
+
1102 3473 BS_SE_SNP2_1000000_50.fastq
−
2817 3131 BS_PE_SNP3_1000000_50_?.fastq
+
1142 3267 BS_SE_SNP3_1000000_50.fastq
−
4362 16074 CS_PE_DEL200_1000000_50_?.fastq
+
6193 6909 CS_PE_DEL200_1000000_50_?.fastq
−
4385 -1 CS_PE_DEL30_1000000_50_?.fastq
+
6173 6636 CS_PE_DEL30_1000000_50_?.fastq
−
4373 9287 CS_PE_DEL5_1000000_50_?.fastq
+
6096 6702 CS_PE_DEL5_1000000_50_?.fastq
−
773 -1 CS_PE_EXACT_1000000_50_?.fastq
+
858 8496 CS_PE_EXACT_1000000_50_?.fastq
−
1735 3142 CS_PE_INDEL30_1000000_50_?.fastq
+
1743 948 CS_PE_INDEL30_1000000_50_?.fastq
−
4023 8591 CS_PE_INDEL5_1000000_50_?.fastq
+
5517 5412 CS_PE_INDEL5_1000000_50_?.fastq
−
1034 10528 CS_PE_SNP1_1000000_50_?.fastq
+
1253 8454 CS_PE_SNP1_1000000_50_?.fastq
−
2236 -1 CS_PE_SNP2_1000000_50_?.fastq
+
2113 7420 CS_PE_SNP2_1000000_50_?.fastq
−
3810 6617 CS_PE_SNP3_1000000_50_?.fastq
+
2622 6076 CS_PE_SNP3_1000000_50_?.fastq
−
7129 1493 CS_SE_DEL200_1000000_50.fastq
+
3878 1493 CS_SE_DEL200_1000000_50.fastq
−
7115 1513 CS_SE_DEL30_1000000_50.fastq
+
3859 1513 CS_SE_DEL30_1000000_50.fastq
−
7065 1542 CS_SE_DEL5_1000000_50.fastq
+
3775 1542 CS_SE_DEL5_1000000_50.fastq
−
1544 1666 CS_SE_EXACT_1000000_50.fastq
+
621 1666 CS_SE_EXACT_1000000_50.fastq
−
2954 289 CS_SE_INDEL30_1000000_50.fastq
+
1392 289 CS_SE_INDEL30_1000000_50.fastq
−
6547 1390 CS_SE_INDEL5_1000000_50.fastq
+
3525 1390 CS_SE_INDEL5_1000000_50.fastq
−
1690 1661 CS_SE_SNP1_1000000_50.fastq
+
874 1661 CS_SE_SNP1_1000000_50.fastq
−
2853 1449 CS_SE_SNP2_1000000_50.fastq
+
1965 1449 CS_SE_SNP2_1000000_50.fastq
−
4039 1237 CS_SE_SNP3_1000000_50.fastq
+
3314 1237 CS_SE_SNP3_1000000_50.fastq
 
</pre>
 
</pre>
Zhanxw
255

edits

Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/487"

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