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, 14:48, 8 February 2010
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| == Available Test Datasets == | | == Available Test Datasets == |
| + | |
| + | *Location: wonderland:~zhanxw/BigSimulation |
| + | *Scenarios: |
| + | no polymorphism ; |
| + | 1, 2, 3 SNP ; |
| + | Deletion 5, 30, 200; |
| + | Insertion 5, 30 |
| + | * Quality String |
| + | Picked the 75 percentile of Sanger Iluumina 108 mer test data set |
| + | * Format |
| + | both base space and color space |
| + | both single end and paired end |
| + | * Program |
| + | generator |
| + | |
| + | Usage: |
| + | generator [bs|cs] [se|pe] [exact|snpXX|indelXX|delXX] -n numbers -l readLength -i insertSize |
| + | exact: Accurate sample from reference genome |
| + | snpXX: Bring total XXX SNP for a single read or a pair of reads |
| + | indelXX: Insert a random XX-length piece for a single read, or at the same position for a paired reads |
| + | delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads |
| + | |
| + | e.g. ./generator bs se exact -n 100 -l 35 |