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== Where to find it ==
== Where to find it ==
This command line tool can be obtained via:
This command line tool can be obtained via:
* Release Download '''coming soon'''
* Release Download
* github: https://github.com/statgen/fastQValidator
* github: https://github.com/statgen/fastQValidator
** Current development version
** Current development version
=== Releases ===
=== Releases ===
If you prefer to run the last official release rather than the latest development version, you can download that here.
There are two versions of the release, one that include libStatGen and one that does not. If you already have libStatGen installed and want to use your own copy, use the version that does not include libStatGen.
=== Full Release (includes libStatGen) ===
To install an official release, unpack the downloaded file (tar xvf), cd into the fastQValidator_x.x.x directory and type make all.
[[Media:fastQValidatorLibStatGen.0.1.1a.tgz|fastQValidatorLibStatGen.0.1.1a.tgz]] - Released 11/13/2012
'''fastQValidatorLibStatGen.0.1.1a Release Notes'''
* Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]] (update for this version)
* Contains: [[#Release of just fastQValidator (does not include libStatGen)|fastQValidator version 0.1.1]] (same as full release 0.1.1)
'''Older Releases'''
* [[Media:fastQValidatorLibStatGen.0.1.1.tgz|fastQValidatorLibStatGen.0.1.1.tgz]] - Released 10/19/2012
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.3]]
** Contains: [[#Release of just fastQValidator (does not include libStatGen)|fastQValidator version 0.1.1]]
*** Validates a fastq file with options to print additional information.
=== Release of just fastQValidator (does not include libStatGen) ===
To install an official release, unpack the downloaded file (tar xvf), cd into the fastQValidator_x.x.x directory and type make all.
[[Media:fastQValidator.0.1.1.tgz|fastQValidator.0.1.1.tgz]] - Released 10/19/2012
'''fastQValidator.0.1.1 Release Notes'''
* Validates a fastq file with options to print additional information.
* Adds option to output average qualities
'''Older Releases'''
*[[Media:fastQValidator.0.0.1.tgz|fastQValidator.0.0.1.tgz]]
** Validates a fastq file with options to print additional information.
=== Using github ===
=== Using github ===
* 0 - the fastq file is valid.
* 0 - the fastq file is valid.
* < 0 - invalid options specified.
* < 0 - invalid options specified.
* > 0 - fastq file did not validate succesfully. One of the [http://www.sph.umich.edu/csg/mktrost/doxygen/current/classFastQStatus.html FastQStatus] failure values is returned
* > 0 - fastq file did not validate succesfully. One of the [http://csg.sph.umich.edu//mktrost/doxygen/current/classFastQStatus.html FastQStatus] failure values is returned
== FastQ Validator Output ==
== FastQ Validator Output ==
