FastQValidator

From Genome Analysis Wiki
Revision as of 23:30, 16 November 2009 by Goncalo (talk | contribs) (Created page with '== Status == The FastQ Validator is on our Todo List. == Valid FastQ File Requirements == A valid fastQ file should meet the following requirements: * A base sequence sho…')
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

Status

The FastQ Validator is on our Todo List.

Valid FastQ File Requirements

A valid fastQ file should meet the following requirements:

  • A base sequence should have non-zero length.
  • A quality string should be present for every base sequence.
  • Paired quality and base sequences should be of the same length.
  • Valid quality values should all have ASCII codes > 32.
  • Valid bases should be ACTG or N, unless ambiguous bases are explicitly allowed by the application consuming the file.
  • Every entry in the file should have a unique identifier.