Difference between revisions of "GREGOR"
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Jump to navigationJump to search (Created page with "==FallInBed== '''FallInBed''' is a tool to test for enrichment of an input list of trait-associated index SNPs in experimentally annotated regulatory domains (BED files). Bec...") |
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== Build FallInBed == | == Build FallInBed == | ||
| − | To build FallInBed, copy the FallInBed package | + | To build FallInBed, copy the FallInBed package to the directory your want, and then run the following command. |
tar xzvf FallInBed.tar.gz | tar xzvf FallInBed.tar.gz | ||
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== Download reference files == | == Download reference files == | ||
| − | Download the reference files from this link [http://www.sph.umich.edu/csg/jich/FallInBed/FallInBed | + | Download the reference files from this link [http://www.sph.umich.edu/csg/jich/FallInBed/ FallInBed Download],then un-package the file |
tar xzvf FallInBed.reference.tar.gz | tar xzvf FallInBed.reference.tar.gz | ||
After unzip, copy all reference files to directory "./ref" | After unzip, copy all reference files to directory "./ref" | ||
Revision as of 14:02, 9 August 2013
FallInBed
FallInBed is a tool to test for enrichment of an input list of trait-associated index SNPs in experimentally annotated regulatory domains (BED files). Because all reference data are hg19, so your index SNP and bed files should also be hg19 version.
Download FallInBed
Through this this link FallInBed Download, you can download a copy of FallInBed.
Build FallInBed
To build FallInBed, copy the FallInBed package to the directory your want, and then run the following command.
tar xzvf FallInBed.tar.gz
After unzip, you can find 3 directories in "FallInBed" (./example ./lib ./script).
Download reference files
Download the reference files from this link FallInBed Download,then un-package the file
tar xzvf FallInBed.reference.tar.gz
After unzip, copy all reference files to directory "./ref"
