GREGOR

FallInBed

FallInBed is a tool to test for enrichment of an input list of trait-associated index SNPs in experimentally annotated regulatory domains (BED files). Because all reference data are hg19, so your index SNP and bed files should also be hg19 version.

Download FallInBed

Through this this link FallInBed Download, you can download a copy of FallInBed.

Build FallInBed

To build FallInBed, copy the FallInBed package to the directory your want, and then run the following command.

 tar xzvf FallInBed.tar.gz

After unzip, you can find 3 directories in "FallInBed" (./example ./lib ./script).

Download reference files

Download the reference files from this link FallInBed Download,then un-package the file

 tar xzvf FallInBed.reference.tar.gz

After unzip, copy all reference files to directory "./ref"