GlfSingle

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glfSingle is a GLF-based variant caller for next-generation sequencing data. It takes a GLF format genotype likelihood file as input and generates a VCF-format set of variant calls as output.

Basic Usage Example

Here is an example of how glfSingle works:

  glfSingle -g NA19240.chrom20.SLX.glf -b NA19240.chrom20.SLX.vcf > NA19240.chrom20.SLX.log

Command Line Options

Model for Variant Calling