GotCloud

Either pipeline can be run on a single machine or on a cluster of machines. The following describes the use of this software with the Amazon Web Services (https://aws.amazon.com/), but you can just as easily use it on your own machine(s) by just installing it.

Preparation in AWS

• Preparing an Amazon Single Instance
• Preparing a Cluster using StarCluster

Install the Software

• Installing the software as a debian package
• Installing the software as a red hat package

Run the Software

• Alignment Pipeline
• Variant Calling Pipeline (UMAKE)

Resources / Cost

• AWS Resources

Development Notes

• Creating an AMI on EC2
• Mount S3 Volume