Difference between revisions of "GotCloud: Alignment Pipeline"

From Genome Analysis Wiki
Jump to navigationJump to search
Line 5: Line 5:
 
<code>
 
<code>
 
  '''cd ~/myseq'''
 
  '''cd ~/myseq'''
  ''' /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ???
+
  ''' /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ???'''
 
</code>
 
</code>

Revision as of 10:15, 29 October 2012

Back to the beginning [1]

Running the aligner is straightforward:

cd ~/myseq
 /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ???