Difference between revisions of "GotCloud: Alignment Pipeline"
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Jump to navigationJump to searchTerry Gliedt (talk | contribs) (Created page with 'Login as a normal user (not as root) and do: # Test the aligner (fast, about 3 minutes) /usr/local/biopipe/bin/gen_biopipeline.pl --test ~/testalign rm -rf ~/testalign …') |
Terry Gliedt (talk | contribs) |
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| − | + | Back to the beginning [http://genome.sph.umich.edu/wiki/Pipelines] | |
| − | + | Running the aligner is straightforward: | |
| − | + | ||
| − | + | <code> | |
| − | + | '''cd ~/myseq''' | |
| − | + | ''' /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ??? | |
| − | /usr/local/biopipe/bin/ | + | </code> |
| − | |||
Revision as of 10:13, 29 October 2012
Back to the beginning [1]
Running the aligner is straightforward:
cd ~/myseq
/usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ???
