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Revision as of 02:02, 8 January 2013
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==== Required Settings ====
==== Required Settings ====
See [[#Reference File|Reference File]] for the required reference file settings.
See [[#Reference Files|Reference Files]] for the required reference file settings.
See [[#Sequence Index File|Sequence Index File]] for how to set the index file either via command line options or via configuration.
See [[#Sequence Index File|Sequence Index File]] for how to set the index file either via command line options or via configuration.
