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Finally, install the other packages. We recommend that at least the first time, you install the test packages so you can conveniently test the installation and make sure everything runs smoothly.
Finally, install the other packages. We recommend that at least the first time,
you install the test packages so you can conveniently test the installation and make sure everything runs smoothly.
The tests run within a few minutes and are self checking, so unless you see obvious errors,
The tests run within a few minutes and are self checking, so unless you see obvious errors,
you can be reasonably sure everything is set up properly.
you can be reasonably sure everything is set up properly.
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sudo dpkg -i biopipe-testalign_0.6_amd64.deb biopipe-umake_M.n_amd64.deb biopipe-testumake_M.n_amd64.deb
sudo dpkg -i biopipe-umake_M.n_amd64.deb
sudo dpkg -i biopipe-testalign_0.6_amd64.deb biopipe-testumake_M.n_amd64.deb
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If you installed the test packages, test your installation. You only need to do this once,
unless you have made signifcant changes to your Unix system.
Login as a normal user (not as root) and do:
<code>
# Test the aligner (fast, about 3 minutes)
/usr/local/biopipe/bin/gen_biopipeline.pl --test ~/testalign
/usr/local/biopipe/bin/gen_biopipeline.pl --test ~/testalign
# Test umake (longer, about 15 minutes)
/usr/local/biopipe/bin/umake.pl --test ~/testumake
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