Difference between revisions of "Introduction to new students"
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=== Nex-Gen Sequencing (NGS) === | === Nex-Gen Sequencing (NGS) === | ||
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SEQAnswer forum [[http://seqanswers.com/ Homepage ]] | SEQAnswer forum [[http://seqanswers.com/ Homepage ]] | ||
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RNAseq blog [[http://rna-seqblog.com/ Homepage ]] | RNAseq blog [[http://rna-seqblog.com/ Homepage ]] | ||
| − | ==SAM/VCF format documentation == | + | |
| + | === SAM/VCF format documentation === | ||
[[http://samtools.sourceforge.net/SAM1.pdf SAM specification]] | [[http://samtools.sourceforge.net/SAM1.pdf SAM specification]] | ||
Revision as of 18:46, 15 July 2010
Introduction to New Students
Programming
- R/C++/perl/python code snipplets / toy examples of various packages
- How to use git
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]). A dedicated introduction page is here: [How to use git]
Unix
CSG Documentation [AWK, BASH, UNIX commands and etc.]
Tools
Samtools [Manual]
PLINK [Homepage]
MERLIN [Homepage]
BWA[Homepage ]
Resources
Nex-Gen Sequencing (NGS)
SEQAnswer forum [Homepage ]
RNAseq blog [Homepage ]
SAM/VCF format documentation
Group Chat [instant Messaging]
