Introduction to new students
From Genome Analysis Wiki
Jump to navigationJump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Introduction to New Students
- R/C++/perl/python code snipplets / toy examples of various packages
- How to use git
Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]).
A dedicated introduction page is here: [How to use git]
- Tools howto - with examples - samtools, PLINK, MERLIN, bwa, etc
Samtools [Manual]
PLINK [Homepage]
MERLIN [Homepage]
BWA[Homepage ]
- SAM/VCF format documentation
- UNIX 101
CSG Documentation [AWK, BASH, UNIX commands and etc.]
- Collection of useful resources/links
Group Chat [instant Messaging]