Introduction to new students

Introduction to New Students

Programming

• R/C++/perl/python code snipplets / toy examples of various packages

[Internal Resources]

• How to use git

Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[1]]). A dedicated introduction page is here: [How to use git]

Unix

CSG Documentation [AWK, BASH, UNIX commands and etc.]

Tools

Samtools [Manual]

PLINK [Homepage]

MERLIN [Homepage]

BWA[Homepage ]

Resources

Nex-Gen Sequencing (NGS)

SEQAnswer forum [Homepage ] RNAseq blog [Homepage ]

SAM/VCF format documentation

[SAM specification]

[VCF specification]

Group Chat [instant Messaging]