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393 bytes added
, 01:14, 13 May 2010
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| Besides conforming to SAM specification, Karma developed its own optional tags to help evaluate mapping. | | Besides conforming to SAM specification, Karma developed its own optional tags to help evaluate mapping. |
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− | {| cellspacing="1" cellpadding="1" border="1" width="600" | + | {| cellspacing="1" cellpadding="1" border="1" style="width: 1034px; height: 291px;" |
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| | XA | | | XA |
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| | ER | | | ER |
− | | Different kind of errors when mapping | + | | |
| + | Different kind of errors when mapping: |
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| + | ER:Z:no_match -> UNSET_QUALITY<br>ER:Z:invalid_bases -> INVALID_DATA (not used yet)<br>ER:Z:duplicates -> EARLYSTOP_DUPLICATES ( early stop due to reaching max number of best matches, with all bases matched)<br>ER:Z:quality -> EARLYSTOP_QUALITY (early stop due to reaching max posterior quality)<br>ER:Z:repeats -> REPEAT_QUALITY (not used yet)<br> |
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| |} | | |} |
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| <br> | | <br> |
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− | <br> | + | <br> |
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| = Other test and check capabilities = | | = Other test and check capabilities = |