255
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
= Overview =
= Overview =
KARMA(K-tuple Alignment with Rapid Matching Algorithm) is able to map 35bp single end color space reads at the speed of approximately $1.2-2.0 \times 10^9$ reads per hour using Intel Xeon X760 2.66GHz and 128G memory.
KARMA(K-tuple Alignment with Rapid Matching Algorithm) is able to map 35bp single end color space reads at the speed of approximately <math>1.2-2.0 \times 10^9</math> reads per hour using Intel Xeon X760 2.66GHz and 128G memory.
We summarize software requirments as following:
We summarize software requirments as following:
= <br> Additional Information<br> =
= <br> Additional Information<br> =
== {{anchor|foo}}Input file requirement<br> ==
== {{anchor|sec4.1}}Input file requirement<br> ==
KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br>
KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br>
