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, 06:48, 15 November 2009
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| We summarize software requirments as following: | | We summarize software requirments as following: |
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− | * Binary reference genome in nucleotide space (see [[sec4.1|Karma-colorspace#sec4.1]]}) | + | * Binary reference genome in nucleotide space (see [[Input file requirement|#Input file requirement]]}) |
| * Binary reference genome and word index in color space (see \ref{sec:2}) | | * Binary reference genome and word index in color space (see \ref{sec:2}) |
| * Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification) | | * Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification) |
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| = <br> Additional Information<br> = | | = <br> Additional Information<br> = |
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− | == {{anchor|sec4.1}}Input file requirement<br> == | + | == Input file requirement == |
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| KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br> | | KARMA require input files in valid color space FASTQ format.<br> We require the length of reads(including leading primer) should equal to the length of its quality string.<br> <br> A valid example of color space FASTQ file:<br> |