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We summarize software requirments as following:
We summarize software requirments as following:
* Binary reference genome in nucleotide space (see [[#sec4.1|Input file requirement]]})
* Binary reference genome in nucleotide space (see [[#Input file requirement|Input file requirement]]})
* Binary reference genome and word index in color space (see \ref{sec:2})
* Binary reference genome and word index in color space (see \ref{sec:2})
* Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)
* Color space reads in valid color space FASTQ format (see \ref{sec:4.1} for file specification)
