From Genome Analysis Wiki
Jump to navigationJump to search
513 bytes added
, 10:54, 25 March 2010
Line 12: |
Line 12: |
| *** int minReadLength - The minimum length that a base sequence must be for it to be valid. | | *** int minReadLength - The minimum length that a base sequence must be for it to be valid. |
| *** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors. | | *** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors. |
| + | *'''disableMessages''' : Disables cout messages. This does not include the Base Composition. Those are turned on/off based on a parameter to validateFastQFile. |
| + | ** Parameters: NONE |
| + | ** Return Value: NONE |
| + | *'''disableMessages''' : Enables cout messages. This does not include the Base Composition. Those are turned on/off based on a parameter to validateFastQFile. |
| + | ** Parameters: NONE |
| + | ** Return Value: NONE |
| *'''openFile''' : Open a FastQ File | | *'''openFile''' : Open a FastQ File |
| ** Parameters: | | ** Parameters: |
Line 32: |
Line 38: |
| ** Parameters: | | ** Parameters: |
| *** String filename - fastq file to be validated. | | *** String filename - fastq file to be validated. |
| + | *** bool printBaseComp - whether or not to print the base composition (true = print; false = don't print) |
| *** BaseAsciiMap::SPACE_TYPE spaceType: | | *** BaseAsciiMap::SPACE_TYPE spaceType: |
| **** BASE_SPACE - Bases only; | | **** BASE_SPACE - Bases only; |