3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
** Return Value
** Return Value
*** bool: true if there were no errors in the file, false otherwise.
*** bool: true if there were no errors in the file, false otherwise.
** Notes:
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Read a FastQ Sequence From the File:''' readFastQSequence
*'''Read a FastQ Sequence From the File:''' readFastQSequence
** Parameters: NONE
** Parameters: NONE
** Return Value
** Return Value
*** int: FASTQ_SUCCESS if successfully read and valid, FASTQ_FAILURE if not successfully read, FASTQ_INVALID if the sequence was invalid..
*** int: FASTQ_SUCCESS if successfully read and valid, FASTQ_FAILURE if not successfully read, FASTQ_INVALID if the sequence was invalid.
** Notes:
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Get the Space Type for the File:''' getSpaceType
*'''Get the Space Type for the File:''' getSpaceType
** Parameters: NONE
** Parameters: NONE
** Return Value
** Return Value
*** BaseAsciiMap::SPACETYPE: COLOR_SPACE if the file is color space (0,1,2,3,.), BASE_SPACE if the file is base space (A,C,G,T,N), BOTH_SPACE if the file is both (0,1,2,3,.,A,C,G,T,N), or UNKNOWN if it has yet to be determined.
*** BaseAsciiMap::SPACETYPE: COLOR_SPACE if the file is color space (0,1,2,3,.), BASE_SPACE if the file is base space (A,C,G,T,N), BOTH_SPACE if the file is both (0,1,2,3,.,A,C,G,T,N), or UNKNOWN if it has yet to be determined.
*'''Access last read Sequence Lines'''
** Public String Variables to avoid having to copy the strings:
*** mySequenceIdLine
*** mySequenceIdentifier
*** myRawSequence
*** myPlusLine
*** myQualityString
== Validation Criteria ==
== Validation Criteria ==
