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6 bytes added ,  14:01, 22 February 2010
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*** int minReadLength - The minimum length that a base sequence must be for it to be valid.
 
*** int minReadLength - The minimum length that a base sequence must be for it to be valid.
 
*** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors.
 
*** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors.
*'''Open a FastQ File:''' openFile
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*'''openFile''' : Open a FastQ File
 
** Parameters:
 
** Parameters:
 
*** String filename - fastq file to be opened.
 
*** String filename - fastq file to be opened.
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** Return Value
 
** Return Value
 
*** FastQStatus: FASTQ_SUCCESS if successfully opened, FASTQ_FAILURE if not.
 
*** FastQStatus: FASTQ_SUCCESS if successfully opened, FASTQ_FAILURE if not.
*'''Close a FastQ File:''' closeFile
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*'''closeFile''' : Close a FastQ File
 
** Parameters: NONE
 
** Parameters: NONE
 
** Return Value
 
** Return Value
 
*** bool: FastQStatus - FASTQ_SUCCESS if successfully closed, FASTQ_FAILURE if not.
 
*** bool: FastQStatus - FASTQ_SUCCESS if successfully closed, FASTQ_FAILURE if not.
*'''Determine if a FastQ File is open Method:''' isOpen
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*'''isOpen''' : Determine if a FastQ File is open Method
 
** Parameters: NONE
 
** Parameters: NONE
 
** Return Value
 
** Return Value
 
*** bool: true if a file is open, false if not.
 
*** bool: true if a file is open, false if not.
*'''Validate an entire FastQ File:''' validateFastQFile
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*'''validateFastQFile''' : Validate an entire FastQ File
 
** Parameters:
 
** Parameters:
 
*** String filename - fastq file to be validated.
 
*** String filename - fastq file to be validated.
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** Notes:
 
** Notes:
 
*** Invalid information is printed to cout until maxReportedErrors is hit.
 
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Read a FastQ Sequence From the File:''' readFastQSequence
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*'''readFastQSequence''' : Read a FastQ Sequence From the File
 
** Parameters: NONE
 
** Parameters: NONE
 
** Return Value
 
** Return Value
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** Notes:
 
** Notes:
 
*** Invalid information is printed to cout until maxReportedErrors is hit.
 
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''Get the Space Type for the File:''' getSpaceType
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*'''getSpaceType''' : Get the Space Type for the File
 
** Parameters: NONE
 
** Parameters: NONE
 
** Return Value
 
** Return Value

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