LibStatGen: FASTQ
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How to Use the fastQValidator Executable
Required Parameters:
-f : FastQ filename with path to be prorcessed.
Optional Parameters:
-l : Minimum allowed read length (Defaults to 10).
-e : Maximum number of errors to display before suppressing them(Defaults to 20).
-b : Raw sequence type: B - ACTGN only (Default)
C - 0123. only
BC - ACTGN or 0123.
Testing only Parameters:
-t : If "ReadOnly" is specified, the fastq will be read but not processed. This may be used for determining read time.
Usage:
./fastQValidator -f <fileName> -l <minReadLen> -e <maxReprotedErrors> -b <rawSeqType>
Examples:
../fastQValidator -f testFile.txt
../fastQValidator -f testFile.txt -l 10 -b BC -e 100
./fastQValidator -f test/testFile.txt -l 10 -b BC -e 100
time ./fastQValidator -f test/testFile.txt -t ReadOnly
