Difference between revisions of "LibStatGen Download"
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To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. | To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. | ||
| − | [[Media:LibStatGen.1.0. | + | [[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012 |
| − | '''LibStatGen.1.0. | + | '''LibStatGen.1.0.1 Release Notes''' |
| − | |||
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq | * Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq | ||
| + | * BAM Additions: | ||
| + | ** Ability to use require/exclude flags when reading | ||
| + | ** CigarHelper for soft clipping | ||
| + | ** Fixed bug in BamIndex that wasn't closing the file | ||
| + | ** Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012. | ||
| + | * General Additions: | ||
| + | ** Modifications to improve file handling/string processing | ||
| + | ** Fixed some compile warnings | ||
| + | ** Update Parameters class to always print warnings about unknown parameters to stderr | ||
| + | ** Update PedigreePerson to create/delete the strings object | ||
| + | ** Cleanup GenomeSequence to remove code that is also in BaseAsciiMap | ||
| + | * Samtools Modifications: | ||
| + | ** Do not use knetfile and fix compile warning | ||
| + | |||
| + | ''' Older Releases''' | ||
| + | *[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011 | ||
| + | ** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository. | ||
| + | ** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq | ||
Revision as of 11:34, 4 May 2012
General libStatGen Information
Latest Development Versions
For information about obtaining the latest Development Versions, see Where to Find libStatGen
Official Releases
If you prefer to run the last official release rather than the latest development version, you can download that here.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type make all.
LibStatGen.1.0.1.tgz - Released 05/04/2012
LibStatGen.1.0.1 Release Notes
- Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
- BAM Additions:
- Ability to use require/exclude flags when reading
- CigarHelper for soft clipping
- Fixed bug in BamIndex that wasn't closing the file
- Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012.
- General Additions:
- Modifications to improve file handling/string processing
- Fixed some compile warnings
- Update Parameters class to always print warnings about unknown parameters to stderr
- Update PedigreePerson to create/delete the strings object
- Cleanup GenomeSequence to remove code that is also in BaseAsciiMap
- Samtools Modifications:
- Do not use knetfile and fix compile warning
Older Releases
- LibStatGen.1.0.0.tgz - Released 10/10/2011
- Initial release of libStatGen. It started from the library found in the deprecated StatGen repository.
- Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
