LibStatGen Download

From Genome Analysis Wiki
Revision as of 19:15, 19 January 2011 by Mktrost (talk | contribs)
Jump to navigationJump to search


Download

Click the link to download the tar of the statgen library and tools: StatGen.0.1.3.tgz‎ - Released 1/19/2011

If you use this software, please e-mail me, Mary Kate Trost, at mktrost@umich.edu

This version is recommended for Unix users with access to the GNU C++ compiler.

To install, unpack the downloaded file (tar xvf), cd into the statgen directory and type make.

Notes

  • This software requires zlib to be installed on your machines.
  • This software requires openssl and md5 (libssl-dev on ubuntu)
  • Current Release Notes (1/19/2011)
    • FASTQ
      • Add option to disable the unique sequence identifier check since that uses a lot of memory.
    • GLF
      • Automatically write the End Maker record when writing GLF files.
      • Add capability of consuming records to get to the next reference section.
      • Fixed bug in writing GLF records of type 2.
    • Other
      • Remove ZLIB from being contained within the repository (having zlib in the repository may have caused some compile issues in the previous version).

Problems in Current Release

Let me know if you experience any of these problems as we may already have a fix you can use:

  • None reported yet.


Previous Versions

  • StatGen.0.1.2.tgz - Released 11/09/2010
    • FASTQ
      • Add option to disable the unique sequence identifier check since that uses a lot of memory.
    • GLF
      • Automatically write the End Maker record when writing GLF files.
      • Add capability of consuming records to get to the next reference section.
      • Fixed bug in writing GLF records of type 2.
    • Other
      • Remove ZLIB from being contained within the repository (having zlib in the repository may have caused some compile issues in the previous version).
  • StatGen.0.1.1.tgz - Released 11/09/2010
    • Added QPLOT to the release
    • Made lib/general/StringBasics.h method IsEmpty const
    • Removed an unimplemented method from GlfRecord.h
  • StatGen.0.1.0.tgz - Released 11/02/2010
    • Original version.