From Genome Analysis Wiki
Jump to navigationJump to search
3 bytes added
, 23:39, 23 September 2011
Line 2: |
Line 2: |
| LiftOver can have three use cases: | | LiftOver can have three use cases: |
| | | |
− | (1) [[#Lift genome positions | convert genome position from one genome assembly to another genome assembly]] | + | (1) [[#Lift genome positions | Convert genome position from one genome assembly to another genome assembly]] |
| + | |
| In most scenarios, we have known genome positions in NCBI build 36 (UCSC hg 18) and hope to lift them over to NCBI build 37 (UCSC hg19). | | In most scenarios, we have known genome positions in NCBI build 36 (UCSC hg 18) and hope to lift them over to NCBI build 37 (UCSC hg19). |
| | | |
− | (2) [[#Lift dbSNP rs numbers | convert dbSNP rs number from one build to another]] | + | (2) [[#Lift dbSNP rs numbers | Convert dbSNP rs number from one build to another]] |
| + | |
| + | (3) [[#Lift Merlin/PLINK format | Convert both genome position and dbSNP rs number over different versions]] |
| | | |
− | (3) [[#Lift Merlin/PLINK format |convert both genome position and dbSNP rs number over different versions]]
| |
| It is likely to see such type of data in Merlin/PLINK format. | | It is likely to see such type of data in Merlin/PLINK format. |
| | | |